If you know the story arc you’re looking for from the Comics Timeline, then bring up the find feature (Ctrl+F) to quickly find the story. The following guide is arranged chronologically as much as possible with the issues/story arcs listed beneath the title of the trade paperback. (Complied in cooperation with Wookieepedia.com)

Sith Era

• Star Wars Omnibus: Tales of the Jedi Volume 1

  Tales of the Jedi: Golden Age of the Sith

  Tales of the Jedi: Fall of the Sith Empire

  Tales of the Jedi: Knights of the Old Republic (formerly The Collection)

  Ulic Qel-Droma and the Beast Wars of Onderon

  The Saga of Nomi Sunrider

• Star Wars Omnibus: Tales of the Jedi Volume 2

  Tales of the Jedi: The Freedon Nadd Uprising

  Tales of the Jedi: Dark Lords of the Sith

  Tales of the Jedi: The Sith War

  Tales of the Jedi: Redemption

• Star Wars Knights of the Old Republic Volume 1: Commencement

  Crossroads (#0)

  Commencement (KotOR #1-6)

• Star Wars Knights of the Old Republic Volume 2: Flashpoint

  Flashpoint (KotOR #7-10)

  Flashpoint Interlude (KotOR #9)

  Reunion (KotOR #11-12)

• Star Wars Knights of the Old Republic Volume 3: Days of Fear, Nights of Anger

  Days of Fear (KotOR #13-15)

  Nights of Anger (KotOR #16-18)

Prequel Era

• Star Wars Republic: Prelude to Rebellion

  Prelude to Rebellion (Republic #1-6)

• Star Wars Republic: Outlander

  Outlander (Republic #7-12)

• Star Wars Republic: Emissaries of Malastare

  Emissaries to Malastare (Republic #13-18)

• Star Wars Republic: Twilight

  Twilight (Republic #19-22)

• Star Wars Republic: The Hunt for Aurra Sing

  The Hunt for Aurra Sing (Republic #28-31)

• Star Wars Republic: Darkness

  Darkness (Republic #32-35)

• Star Wars Republic: The Stark Hyperspace War

  The Stark Hyperspace War (Republic #36-39)

• Star Wars Republic: Rite of Passage

  Rite of Passage (Republic #42-45)

• Star Wars Republic: Honor and Duty

  Honor and Duty (Republic #46-48)

• Clone Wars Volume 1: The Defense of Kamino

  Sacrifice (Republic #49)

  Battle of Kamino (Republic #50)

  Jedi: Mace Windu

• Clone Wars Volume 2: Victories and Sacrifices

  The New Face of War (Republic #51-52)

  Blast Radius (Republic #53)

  Jedi: Shaak Ti

• Clone Wars Volume 3: Last Stand on Jabiim

  Battle of Jabiim (Republic #55-58)

  Enemy Lines (Republic #59)

• Clone Wars Volume 4: Light and Dark

  Double Blind (Republic #54)

  Jedi: Aayla Secura

  Jedi: Dooku

  Striking From the Shadows (Republic #63)

• Clone Wars Volume 5: The Best Blades

  Hate and Fear (Republic #60)

  Dead Ends (Republic #61)

  No Man’s Land (Republic #62)

  Bloodlines (Republic #64)

  Jedi: Yoda

• Clone Wars Volume 6: On the Fields of Battle

  Show of Force (Republic #65-66)

  Forever Young (Republic #67)

  Armor (Republic #68)

  The Dreadnaughts of Rendili (Republic #69-71)

• Clone Wars Volume 7: When They Were Brothers

  Obsession

  Brothers in Arms

• Clone Wars Volume 8: The Last Siege, the Final Truth

  Trackdown (Republic #72-73)

  The Siege of Saleucami (Republic #74-77)

• Clone Wars Volume 9: Endgame

  Into the Unknown (Republic #79-80)

  The Hidden Enemy (Republic #81-83)

  Purge

• Star Wars The Dark Times Volume 1: Path to Nowhere

  Path to Nowhere (Dark Times #1-5)

• Star Wars Empire Volume 1: Betrayal

  Betrayal (Empire #1-4)

• Star Wars Empire Volume 2: Darklighter

  Darklighter (Empire #8-9, 12, 15)

  The Short, Happy Life of Roons Sewell (Empire #10-11)

Rebellion Era

• Star Wars Empire Volume 3: The Imperial Perspective

  What Sin Loyalty? (Empire #13)

  The Savage Heart (Empire #14)

  To the Last Heart (Empire #16-18)

  Target: Vader (Empire #19)

• Star Wars Empire Volume 4: The Heart of the Rebellion

  Princess…Warrior (Empire #5-6)

  A Little Piece of Home (Empire #20-21)

  Alone Together (Empire #22)

  A Valentine’s Story: Breaking the Ice

• Star Wars Empire Volume 5: Allies and Adversaries

  The Bravery of Being Out of Range (Empire #23)

  Idiot’s Array (Empire #24-25)

  “General” Skywalker (Empire #26-27)

• Star Wars Empire Volume 6: In the Shadows of Their Fathers

  In the Shadows of Their Fathers (Empire #29-34)

• Star Wars Empire Volume 7: The Wrong Side of the War

  ThePrice of Power (Empire #31)

  The Wrong Side of the War (Empire #36-40)

• Boba Fett: Man with a Mission

  Sacrifice (Empire #7)

  Wreckage (Empire #28)

  Boba Fett: Overkill

  Boba Fett: Agent of Doom

• Star Wars Rebellion Volume 1: My Brother, My Enemy

  Crossroads (#0)

  My Brother, My Enemy (Rebellion #1-5)

• Star Wars Rebellion Volume 2: The Ahakista Gambit

  The Ahakista Gambit (Rebellion #6-10)

• Star Wars Omnibus: X-wing Rogue Squadron Volume 1

  The Rebel Opposition (X-wing RS #1-4)

  The Phantom Affair (X-wing RS #5-8)

• Star Wars Omnibus: X-wing Rogue Squadron Volume 2

  Battleground: Tatooine (X-wing RS #9-12)

  The Warrior Princess (X-wing RS #13-16)

  Requiem for a Rogue (X-wing RS #17-20)

• Star Wars Omnibus: X-wing Rogue Squadron Volume 3

  In the Empire’s Service (X-wing RS #21-24)

  The Making of Baron Fel (X-wing RS #25)

  Family Ties (X-wing RS #26-27)

  Masquerade (X-wing RS #28-31)

  Mandatory Retirement (X-wing RS #32-35)

Legacy Era

• Star Wars Legacy Volume 1: Broken

  Broken ( Leagacy #1-3, 5-7)

Other - stories scattered across eras

• Star Wars Tales Volume 6

  Shadows and Light (Tales #23)

  Unseen, Unheard (Tales #24)

  Marked (Tales #24)

  Nomad (Tales #21-24)

  Honor Bound (Tales #22)

  Walking the Path that’s Given (Tales #21)

  Lucky (Tales #23)

  Marooned (Tales #22)

  Equals and Opposites (Tales #21)

NOTE:
KotOR = Knights of the Old Republic
X-wing RS = X-wing Rogue Squadron